rs240463054 SNP Detail

Summary

• ID
  rs240463054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11888881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTGTGT AACGGATATG
  TGGTTGGTTG TCTTCTGGGG CTTAGGGCTT ACTGTCAACA GGTAGCACAC TAGTGACCAC
  GGAAAGGCGA GCTTCTCTGA CTAGAAGAGG GGTCTCATTC ACCACTGACC CAGTGTCCGC
  CTGGGAAGTG AAGGCAGAAA GAGGGTGCAC AGGTCACAGA AACCCCACTG GAACACTCAC
  Y
  GCTGCCAACG ATAGTGTTTG TGTAAAAAAT ATAAACGTGT GTTCGAAACC ATGGTGCAAG
  ATAGAATATT TGTCTAGAGA TCAGTTTTCA ATAGGCCAGG AGCAAGATAG TCGATTTTTA
  TTAATAACGA AAAGTATTAA ATAGAAATAA AGTGAAAGAT GAAGACCTTT AGATCGGAGG
  GTGTTGAAGC CATGGCGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494091	CHEV_8_11838881	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240463054					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11888881 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	81 bp downstream
Tex29	testis expressed 29	1607 bp upstream
Tssr76253	transcription start site region 76253	1620 bp upstream
Tssr76254	transcription start site region 76254	1633 bp upstream
Tssr76255	transcription start site region 76255	1687 bp upstream