rs240470026 SNP Detail

Summary

• ID
  rs240470026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80861751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCTCTA GCTAGCCTCC
  TTTCCTCAGC CCCACCCTGC TATTGACATC AAGCTCAAGG ATCCCTAAGA CAAAGCAGGG
  CCGCTGTGAG CCAGTCCGCG AGGGGAGGGC CGGGGCTTCC TGGAGCTTCA CTAGCAAGGT
  CACTGTGGAG TTGTCAAGGC CAGACTTTTG GTGGGCGGAG AGAAGAGCCT TAGACTTGTA
  Y
  GTGCATCTTG GCTAAAGGCA ATTTCTCTAG GGATCCAGCT ACCAGCTGAA AAAAAACAAA
  ACAAAACAAA AAAAAACAAA ACAAAAAATC TACCCTCTAA GACTGCTAGT TGAAAACACC
  ACAGACTGGG TGGAATAACG GGTGTCAGTA CAAAAACTTT TCCTGTTTTT CAAGACACCT
  TGGAGGAGCC AGTCATATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372063429	MGP_WTSI_7_88356889	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240470026					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372063429	MGP_WTSI_7_88356889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80861751 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	183 bp downstream
Cpgi19350	CpG island 19350	215 bp proximal
Gm44968	predicted gene 44968	1216 bp downstream
Gm73624	predicted gene, 73624	within coordinates
Pde8a	phosphodiesterase 8A	1593 bp upstream
Tssr67494	transcription start site region 67494	1255 bp upstream
Tssr67495	transcription start site region 67495	1284 bp upstream
Tssr67496	transcription start site region 67496	1320 bp upstream
Tssr67497	transcription start site region 67497	1342 bp upstream
Tssr67498	transcription start site region 67498	1491 bp upstream
Tssr67499	transcription start site region 67499	1564 bp upstream
Tssr67500	transcription start site region 67500	1748 bp upstream
Tssr67501	transcription start site region 67501	1774 bp upstream
Tssr73321	transcription start site region 73321	1122 bp downstream
Tssr73322	transcription start site region 73322	1198 bp downstream
Tssr73323	transcription start site region 73323	1648 bp downstream
Tssr73324	transcription start site region 73324	1672 bp downstream