rs240472289 SNP Detail

Summary

• ID
  rs240472289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116609231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGAGGT CTGACACGGT
  TTGTCAGGTT CTTGGTTGTA TTTGCAGGGC TAAGAACCAT GCTCAGCAGG CAGGAGGTTC
  TCAGTACACA TTTGTTGCAT CAACAAACTG GTAAGATGCT TCTCTGCTTA CTTCAATATT
  TCCCTTATTC TCTTCTAGCC ACAGTCCTAC AAAGCAGGGC TCACTGTATC TGCCTTGGCC
  R
  ATAGGTAAAT GAAGGCCAGA CAGTTGCTTC AGGAGTTCCT GTCTCTGGCT GAAGAGTTCT
  GGCCAGCAGA GGGAGCTGTT TCTGCAGATG CCAGAGCCCT GAGCTTAATG ATGTTTGATC
  TGCATAATGG TCAACAACTC AATAAGCCAG ACACTATATG AACTTTATCA AAGCTGGAAT
  GAATTAATGC ACAGCGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369777154	MGP_WTSI_6_116582288	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240472289					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369777154	MGP_WTSI_6_116582288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116609231 () rs orientation: forward

Symbol	Name	Function Class
Gm44154	predicted gene, 44154	within coordinates
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	738 bp downstream
Rr132438	regulatory region 132438	within coordinates
Rr147140	regulatory region 147140	631 bp distal
Rr147141	regulatory region 147141	1771 bp proximal
Rr151415	regulatory region 151415	within coordinates
Tssr62571	transcription start site region 62571	1035 bp downstream
Tssr62572	transcription start site region 62572	1074 bp downstream
Tssr62573	transcription start site region 62573	1139 bp downstream
Tssr62574	transcription start site region 62574	1297 bp downstream
Tssr62575	transcription start site region 62575	1544 bp downstream