rs240474722 SNP Detail

Summary

• ID
  rs240474722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162397971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCGCAAAG TAGCATCTTC TACGGGACCT
  ACATCCTAGT CACCCTTTCA GCTCCAGTTG AAAGACTTCT CAGCGTTCCC TACTCATCCC
  ATGTACAACC CACGTGCTCC TCCATCGGAT CTGAACGTCA CAACCCCGGG GGATTCTCCC
  R
  GGTTCAAGAA AGACGGAAGC GATCGACCCG CTCAGGGTCT CCATTGCCTG AACATGTCCC
  CTCCGCCAGA AGACAAGACC CGGAGCGCCG AGACGCTCGA TCTCCGTTGC CTGAGCCTGC
  CCCCTTGCGC CCTCTCCAGG ACTCGGAGTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320082939	CHEV_1_164500533	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240474722					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162397971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	within coordinates
Rr396472	regulatory region 396472	2 bp upstream
Rr396473	regulatory region 396473	740 bp upstream
Rr421988	regulatory region 421988	within coordinates
Rr421989	regulatory region 421989	114 bp proximal
Rr421990	regulatory region 421990	192 bp proximal
Rr421991	regulatory region 421991	835 bp proximal
Tssr9715	transcription start site region 9715	195 bp upstream
Tssr9716	transcription start site region 9716	265 bp upstream
Tssr9717	transcription start site region 9717	285 bp upstream
Tssr9718	transcription start site region 9718	1226 bp upstream
Tssr14622	transcription start site region 14622	80 bp upstream
Tssr14623	transcription start site region 14623	947 bp downstream
Tssr14624	transcription start site region 14624	966 bp downstream
Tssr14625	transcription start site region 14625	993 bp downstream
Tssr14626	transcription start site region 14626	1031 bp downstream
Tssr14627	transcription start site region 14627	1071 bp downstream
Tssr14628	transcription start site region 14628	1092 bp downstream
Tssr14629	transcription start site region 14629	1137 bp downstream
Vamp4	vesicle-associated membrane protein 4	113 bp upstream