rs240477588 SNP Detail

Summary

• ID
  rs240477588
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64697247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTCAGG ATGCAGCTCA
  GGTTCTCAGG CTAGGCAGTG AGTATCTTTA CTCACTGAGC TATCTCACTG GCCAAAGGTG
  TGTTTGTTTG TTTGTTTGTT TGATTTCTTT ATTTTTTATT GGTTATTTTA TTTATCTACT
  TTTCAAACGT TAGCCCCTTT CCGGGTTTCC ACTCTGAAAG TCCCCCATCC CACCCCAGCC
  S
  CCGCCTCCTC GAGGGTGCTC TCCCCCGCCC CCAACATTCC CCCCACCCAC TCCCTCCTGC
  CCCACTACCC TAGCATTTCC CTACACTAGG GCATCAAGCC TTCAGGACCA AGGCCCTCCC
  CTCCCATCGA TGCCCGACAA GGCCAAACAT CAGATCAAGA GGGAACGTTT AAGATCTCCC
  GTCATCCTGC CATCCTTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322985863	CHEV_9_64637772	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240477588					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64697247 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	233 bp downstream
Rr681316	regulatory region 681316	111 bp distal
Rr681317	regulatory region 681317	730 bp proximal
Rr681318	regulatory region 681318	1299 bp proximal
Tssr2909	transcription start site region 2909	829 bp downstream
Tssr85622	transcription start site region 85622	308 bp downstream
Tssr85623	transcription start site region 85623	288 bp downstream
Tssr85624	transcription start site region 85624	991 bp upstream
Tssr90157	transcription start site region 90157	857 bp downstream