rs240485562 SNP Detail

Summary

• ID
  rs240485562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101168019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTCTGT TCTTTGGTCC
  TGACACCCGC TTCCTTGTCT AGGCCTGCCA CCTGGCTCCC CCCACCCCCC TCCCCGGCCT
  ACCAAGTTTC TTGCTTCCCT TACTGACCCC TCCTCCTCCC TCCTTTGTGT CTCCTCCCTC
  TCCAGAGATG CCCTGTATTC AAGCTCAATA TGGAACACCA GCAACGAGCC CAGGACCGCG
  Y
  GACCACCTGA CCGGTGATCC CCTGGCCCTT GAGTTCGGCA AGCCTACCAT GGACCTGGCC
  AGCCCCGAGA CAGCACCTGC CGCACCTGCT ACACTGCCCA GCTTCAGCAC CTTCATGGAC
  GGGTACACCG GAGAGTTTGA CACCTTCCTC TACCAGCTGC CGGGGACGAC CCAGCCGTGC
  TCCTCAGCTT GTTCCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192988	MGP_WTSI_15_101100569	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240485562					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192988	MGP_WTSI_15_101100569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101168019 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr510002	regulatory region 510002	1566 bp distal
Tssr133222	transcription start site region 133222	722 bp downstream
Tssr133223	transcription start site region 133223	32 bp downstream
Tssr133224	transcription start site region 133224	14 bp downstream
Tssr133225	transcription start site region 133225	within coordinates
Tssr133226	transcription start site region 133226	13 bp upstream
Tssr133227	transcription start site region 133227	21 bp upstream
Tssr133228	transcription start site region 133228	39 bp upstream
Tssr133229	transcription start site region 133229	50 bp upstream
Tssr133230	transcription start site region 133230	128 bp upstream
Tssr133231	transcription start site region 133231	160 bp upstream
Tssr133232	transcription start site region 133232	179 bp upstream
Tssr133233	transcription start site region 133233	207 bp upstream
Tssr133234	transcription start site region 133234	225 bp upstream
Tssr133235	transcription start site region 133235	258 bp upstream
Tssr133236	transcription start site region 133236	307 bp upstream
Tssr133237	transcription start site region 133237	329 bp upstream
Tssr133238	transcription start site region 133238	362 bp upstream
Tssr133239	transcription start site region 133239	404 bp upstream
Tssr133240	transcription start site region 133240	496 bp upstream
Tssr133241	transcription start site region 133241	513 bp upstream
Tssr133242	transcription start site region 133242	521 bp upstream
Tssr133243	transcription start site region 133243	547 bp upstream
Tssr133244	transcription start site region 133244	568 bp upstream
Tssr133245	transcription start site region 133245	612 bp upstream
Tssr133246	transcription start site region 133246	637 bp upstream
Tssr133247	transcription start site region 133247	725 bp upstream
Tssr133248	transcription start site region 133248	745 bp upstream
Tssr133249	transcription start site region 133249	1596 bp upstream
Tssr133250	transcription start site region 133250	1630 bp upstream
Tssr133251	transcription start site region 133251	1661 bp upstream
Tssr136545	transcription start site region 136545	161 bp downstream
Tssr136546	transcription start site region 136546	283 bp downstream
Tssr136547	transcription start site region 136547	359 bp downstream
Tssr136548	transcription start site region 136548	369 bp downstream
Tssr136549	transcription start site region 136549	403 bp downstream
Tssr136550	transcription start site region 136550	509 bp downstream
Tssr136551	transcription start site region 136551	585 bp downstream