rs240489515 SNP Detail

Summary

• ID
  rs240489515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14949999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTTCT GATTTATCTC
  AAAGACTTTT TGTTATCATA ATTGGAACAT GTCTTAGTAA CTTTATATGT TTTTTTTCTG
  ATTATGTTAT ATATACCCAT ATATATGAAT ATATGTGTGT ATATGTACAT ATGAATATGT
  ATATGTACAT ATGAATATAC ATACATATAT ACATAAATTT CCCCCACCTC CTGGGTTAGA
  R
  GGAAGTACAT TTCTTCCCTC TAAAAACATG AATACATAAG CATTGGTTTT ATTTTTACAA
  GCCCAGTGTT ACTATCTGGC AGCCAGTGAA TGACTGCCTG GGAGGAATGT CCCCAGTACA
  GCAGAGCTAG ACAGTGACTG ATCCACATGA TACTATGAAG TCATCTCCAT CATGAAGACC
  TGACAGAAAG AAAATGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357061042	MGP_WTSI_3_14884939	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240489515					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061042	MGP_WTSI_3_14884939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14949999 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	1334 bp upstream
Cpgi12992	CpG island 12992	1076 bp proximal
Rr573721	regulatory region 573721	1755 bp distal
Rr573722	regulatory region 573722	1048 bp proximal
Rr573723	regulatory region 573723	1200 bp proximal
Rr573724	regulatory region 573724	1500 bp proximal
Rr573725	regulatory region 573725	1547 bp proximal
Tssr826	transcription start site region 826	1265 bp upstream
Tssr827	transcription start site region 827	1479 bp upstream
Tssr828	transcription start site region 828	1495 bp upstream
Tssr829	transcription start site region 829	1585 bp upstream
Tssr830	transcription start site region 830	1666 bp upstream
Tssr831	transcription start site region 831	1687 bp upstream
Tssr832	transcription start site region 832	1776 bp upstream
Tssr28466	transcription start site region 28466	1744 bp upstream
Tssr28467	transcription start site region 28467	1876 bp upstream