rs240492045 SNP Detail

Summary

• ID
  rs240492045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106698238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTTTC TTTCTTTGTC
  TCTTCTTCTT CCCCTTCCTC TTCCTGCTTT TTTTTTTTTT TTTTCCAGAG GGAAATCTCT
  GTAGCCCTGG CTGTCCTGGA ACTCACTCTG TAGACCAGGC TGGTCTTGAA CTCAGAGATC
  CGCCTGCCTC TGTTTCCCAA GTGCTGGGAT TAAAGGCATG CGCCACTGCC ACTACCACTC
  Y
  TCTGATACAG GCTTAGTAAC AGCCGTAGAA TCTGATCATG ACAAGAGGTC CACAGTGTCT
  TATAATTTCC ACAAGAACGT ATTGGCTGTA ATCGCTCTAT GGAAACGCAC AGAACTCGCT
  CAGAATGCCA AGAACAATAG TGAGTTGCAT GAATCCTGAC GTCTGGGTAG GTTTTGTCAA
  GATTCTGCTC AATTGTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378837757	MGP_WTSI_9_106723370	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240492045					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378837757	MGP_WTSI_9_106723370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106698238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	526 bp proximal
Dcaf1	DDB1 and CUL4 associated factor 1	835 bp upstream
Rr368848	regulatory region 368848	568 bp upstream
Rr401655	regulatory region 401655	1407 bp upstream
Rr686399	regulatory region 686399	1532 bp distal
Rr686400	regulatory region 686400	1629 bp distal
Rr686401	regulatory region 686401	1167 bp distal
Rr686402	regulatory region 686402	345 bp proximal
Rr686403	regulatory region 686403	846 bp proximal
Tssr86935	transcription start site region 86935	855 bp upstream
Tssr86936	transcription start site region 86936	960 bp upstream
Tssr86937	transcription start site region 86937	984 bp upstream