rs240496576 SNP Detail

Summary

• ID
  rs240496576
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93017821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAATGG ATGTTTCATA
  AACCCGTAGG GGTATGTTTG CAGTCCGGGA GAAAGGGGCG CTGTCTTCAG AACTTCCGAG
  AAAGTCCTGG GTGGCACAGC GGCAGGTTGT CCCCGTCCGG GGATCCCCCT AGCCAAGCGA
  GGGTGCGCCC TCCGCAGGCG GCTCCCGGTA GGCCCTCCGT TTCAGCTCTG GGTCTCCCCC
  M
  CAACCCCTCT GTGCCCGCCC CGGCCACCTC GGGGGCGAGG CAGCCCAGCG CGTGGGAGGG
  GACGGCGCGC CATTGGCTTG TGCGCGGCAC TAGAGGAGGG ACCAGTGCGG GCCGCCAGAC
  TCGGGCGAGC CCAGCAGCGC CAGGAGTCCA GCTTGCCCTG CCCTGCCCTG CCCTGCCTGC
  CTAGCGCGGC GCCGCGATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354848753	MGP_WTSI_2_93027633	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240496576					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354848753	MGP_WTSI_2_93027633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93017821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11943	CpG island 11943	within coordinates
Rr561108	regulatory region 561108	928 bp distal
Rr561109	regulatory region 561109	within coordinates
Rr561110	regulatory region 561110	38 bp distal
Rr561111	regulatory region 561111	119 bp proximal
Rr561112	regulatory region 561112	1490 bp proximal
Rr561113	regulatory region 561113	1706 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	mRNA-UTR
Tssr18978	transcription start site region 18978	668 bp downstream
Tssr18979	transcription start site region 18979	66 bp upstream
Tssr18980	transcription start site region 18980	83 bp upstream
Tssr18981	transcription start site region 18981	98 bp upstream
Tssr18982	transcription start site region 18982	296 bp upstream