rs240499366 SNP Detail

Summary

• ID
  rs240499366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91398542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAAATT GATGACTGGT
  TCTTCTTTAA ACACTTGCCC ACCACAAAAA TAACACACAC AACACAGACA CAACACATAC
  ATACACACAC ACCTCACAGA CACAGCACAT ATACCTCACA GCCCTATACA CTGCTCCTTA
  TCAAATGGTA TTAAAAAAAA TCTCAGTTGA CTATTTATTA TGACTGATAC ATTCTCACCA
  Y
  CAGCCATTAC AAGTTATATC TTGCCCACTC CTGTGCCAAA CCCACAAAAG GTGCTTTTAA
  AAAATGATCA ATAATCACGT ATTATTCAGT ATACTTTCGT GTTTAAGGAG GATGAGAAAT
  ATGATAAATG TTCAGTATTT AACAAAATAA GTCTGGTCTA TCAGAAGAAT AGTGCTTTGA
  GGCCATTCTC AGCTTGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399463163	MGP_WTSI_17_91490454	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240499366					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399463163	MGP_WTSI_17_91490454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91398542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9652	CpG island 9652	1915 bp distal
Cpgi9653	CpG island 9653	1515 bp proximal
Gm10308	predicted gene 10308	1723 bp downstream
Nrxn1	neurexin I	within coordinates
Rr334029	regulatory region 334029	1659 bp proximal
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	1601 bp downstream
Tssr149871	transcription start site region 149871	1709 bp downstream
Tssr149872	transcription start site region 149872	1746 bp downstream
Tssr149873	transcription start site region 149873	1870 bp downstream
Tssr149874	transcription start site region 149874	1904 bp downstream
Tssr149875	transcription start site region 149875	1956 bp downstream