rs240501645 SNP Detail

Summary

• ID
  rs240501645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142216581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACGGGGG ATGAAAAGGA
  TACAGGATGG TACTGGATTT TGCAATTGGT GTCTGAGTTA AAAAAAATTT TTTTTTCCAA
  ATTGTTAAGT TAAAGGGACC CAGATTTGAT GCAGAAAAAA ATGATCAGTG TTCAAGGATT
  GGAGACATTC AACATTCTAA TATAAAGAAA AAGGACTTGG CCAAGAGTTA ATTTTGTGCC
  W
  TCTGTGACCC AGAAAGACAT GGAACAGTCA TATAAGACTT GGGATAGCAT GGAAAGCCCT
  CTGCCACATA GAAGTTCATG CCTTACATCA TTGCTCAGCC TGCTTTGGGG GCTTTAGTGA
  GAGAGTTTAT ATTTTATATT TTAAAGAACC CTAACCATGG CCAGAATGCT TGCAGGAGCT
  CTAGGGAGCC CCAAAGCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454658	MGP_WTSI_7_149848749	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240501645					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454658	MGP_WTSI_7_149848749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142216581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1409 bp distal
Cpgi19969	CpG island 19969	1003 bp proximal
Gm49394	predicted gene, 49394	Intron
Igf2	insulin-like growth factor 2	Intron
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	1400 bp proximal
Rr658254	regulatory region 658254	1550 bp distal
Rr658255	regulatory region 658255	1195 bp distal
Rr658256	regulatory region 658256	69 bp proximal
Tssr2464	transcription start site region 2464	1923 bp upstream
Tssr2465	transcription start site region 2465	1760 bp upstream
Tssr2466	transcription start site region 2466	1740 bp upstream
Tssr75890	transcription start site region 75890	1979 bp upstream
Tssr75891	transcription start site region 75891	1856 bp upstream
Tssr75892	transcription start site region 75892	1804 bp upstream
Tssr75893	transcription start site region 75893	1786 bp upstream
Tssr75894	transcription start site region 75894	1638 bp upstream
Tssr75895	transcription start site region 75895	1606 bp upstream
Tssr75896	transcription start site region 75896	1575 bp upstream
Tssr75897	transcription start site region 75897	1557 bp upstream
Tssr75898	transcription start site region 75898	1530 bp upstream
Tssr75899	transcription start site region 75899	987 bp upstream
Tssr75900	transcription start site region 75900	964 bp upstream
Tssr75901	transcription start site region 75901	1819 bp downstream
Tssr75902	transcription start site region 75902	1850 bp downstream
Tssr75903	transcription start site region 75903	1941 bp downstream