rs240503414 SNP Detail

Summary

• ID
  rs240503414
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102618246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACAAGT TGGGGAAGAA
  GATAAGGGGT TTCTGTGGAA GGTTAAGCAC GCTGGTTAAA TCTTTGCAAT GGAAAGTATT
  TTCCGAAATT GATATTAGAC AGAAGAGGTC ATCGAGAGAG TTATCTATGC TGGCATTTTC
  AGTGAACTGC TTACATATCT TATAAGATAT TCTGATCTTT GAGGTTTGCA TTATAGTATT
  A
  GAGTGAGGGG TGCAACAAAT TTGGTTCATA AACTGGAGTT TTATGAGGGC TGTCATTGCA
  GCAGAATGAA CGATCTAAGA AAAAGACCTG GGCCTCTTTG CTCCTTCATC AGGTTCAGAC
  CAGTTCGTAG AGGAAATGGC TCTTAGTTTA GCATCAAGTG ATTAGTTGCT GATTATCTTA
  CTGCATTTAA TACTAAGTGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321234810	CHEV_4_102433654	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240503414					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102618246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	1484 bp distal
Cpgi14510	CpG island 14510	563 bp distal
Rr596308	regulatory region 596308	514 bp distal
Rr596309	regulatory region 596309	26 bp distal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	865 bp downstream
Tssr38070	transcription start site region 38070	771 bp downstream
Tssr38071	transcription start site region 38071	674 bp downstream