rs240504698 SNP Detail

Summary

• ID
  rs240504698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGACAAA GTAGCAAGAT
  TTCGTTGGCT CTGGAGCTGA AGGCAGGCCC AGATGGGTGG GCAAGGGACA CAGCTGTATT
  CTTGGGACAG CTGGGGACAC AGGCTGGAAA AGGATGCAGG TTCTGAACTA AGGTCTCCAG
  CGACCTTTCT TCTCATCAGA ATCTCAGATT ACCCCAAGGT GACCTAGACA CGAGTCCACT
  Y
  TCACAGTCAC TTCCATAGTG ATTTCTGGAG CAGGCCACCA AGGCACACCA CGATAGCAGT
  TTGGTCTAGG AAAGTCAAGG GGGCTCACGA GGTTGAGGCA GCTAGACAAA CAGCTCAAGG
  CCAAGAGCAA AGGGAGATAG CTGGTGGGAA TACCCTGCCA GGGATTCCTG CCACACCAGG
  CAGCCAGAGA CCCAGTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C3H/HeH	C57BL/6J	DBA/1J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350399211	MGP_WTSI_1_90160871	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C3H/HeH	C57BL/6J	DBA/1J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs240504698					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399211	MGP_WTSI_1_90160871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192018 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	522 bp downstream