rs240518939 SNP Detail

Summary

• ID
  rs240518939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:84257289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA TCTCAAAGGA AAATAGGGGA
  Y
  TCCAGCCATC ATGAGACTGA TTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319824328	CHEV_1_84276143	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240518939					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84257289 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	Intron
Rr414250	regulatory region 414250	326 bp distal
Tssr12655	transcription start site region 12655	1248 bp upstream
Tssr12656	transcription start site region 12656	1189 bp upstream
Tssr12657	transcription start site region 12657	1132 bp upstream
Tssr12658	transcription start site region 12658	1109 bp upstream
Tssr12659	transcription start site region 12659	1082 bp upstream
Tssr12660	transcription start site region 12660	636 bp upstream
Tssr12661	transcription start site region 12661	363 bp downstream