rs240530245 SNP Detail

Summary

• ID
  rs240530245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128359155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGCCTTT TCCACATCTG
  GGAAGCTGAC CTGGCGGAGA AGAGACAGAA GGCAGAGGCA GTGATGAGCA CACTTGACAT
  CCACACTTCC TAAGAGGCTC ATGGGATGCA GCATGTCCAT CTGGCAGGGA CTCCTCACAC
  CCAGGGCTTG GGTGGCAAGG TTTCTTCCCT CCCTCTCCCC CACCACATTT TGTTGTTGTT
  R
  TTGTTGTTCT GACGACTTAT TTTATGTACA TCGGTGTTTT GCTTGCATGT ATGTCTGTGT
  GAAAGTATCA GATCCCTTGG ATCTCGCAGT GTGAGCTGCC ATGAGGGTGC TGAACCCAGG
  ACCTCCGGAA GAGTAGAGTC AGTGAGTGCC CTTAACCAGC GATCCATCTT TCTACCTCTC
  CCCCACATGC ACGCTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323534398	CHEV_10_127960342	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240530245					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128359155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2406	CpG island 2406	1420 bp proximal
Esyt1	extended synaptotagmin-like protein 1	within coordinates
Gm29585	predicted gene 29585	within coordinates
Rr369107	regulatory region 369107	1666 bp upstream
Tssr99886	transcription start site region 99886	806 bp upstream