rs240531157 SNP Detail

Summary

• ID
  rs240531157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115049469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTAGAT CTGAAAGAGA
  AGATAGAAGA TGCTGGAGGC CCTTGTGCGG AGGATCAGGT ACTACTGTTG GATGATGAGG
  AGTTGGAAGA TGATGAGAGC CTTAAAGAGC TTGAGATCAA AGACTGCGAC ACCATCATAC
  TCATTAGGGT AATCGACTAG TCTGGCTGCT TGAGTCCGTG CCTAGAGTCT TACGCCTCCC
  Y
  ACCTCATCCC TAGACTCTGA TGGGTTCTTT CTATAGCTTA AATATCAACA TTCCCTTCTC
  TTGCTTAAAA CCCTCTCCTA TAGCCGGGCA GTGGTGGTGC ATGCCTTTAT CTCAGCACTT
  AGAGAATTTC TGAGTTCAAG GCCAGCCTGG TCTATAGAGT GAGTTACAGA ACAGCCAGAG
  CTATACGGAG AAACCCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366345380	MGP_WTSI_5_115361417	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240531157					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366345380	MGP_WTSI_5_115361417	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115049469 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Tssr48138	transcription start site region 48138	1499 bp downstream
Tssr48139	transcription start site region 48139	386 bp downstream
Tssr48140	transcription start site region 48140	352 bp downstream
Tssr48141	transcription start site region 48141	135 bp downstream
Tssr48142	transcription start site region 48142	45 bp downstream
Tssr48143	transcription start site region 48143	2 bp downstream
Tssr48144	transcription start site region 48144	27 bp upstream
Tssr48145	transcription start site region 48145	83 bp upstream
Tssr48146	transcription start site region 48146	132 bp upstream
Tssr48147	transcription start site region 48147	174 bp upstream
Tssr48148	transcription start site region 48148	236 bp upstream
Tssr48149	transcription start site region 48149	263 bp upstream
Tssr48150	transcription start site region 48150	274 bp upstream
Tssr48151	transcription start site region 48151	292 bp upstream
Tssr48152	transcription start site region 48152	374 bp upstream
Tssr48153	transcription start site region 48153	464 bp upstream
Tssr48154	transcription start site region 48154	476 bp upstream
Tssr52739	transcription start site region 52739	405 bp upstream