rs240536874 SNP Detail

Summary

• ID
  rs240536874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32247883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAAAAC AAGTTGGCAC
  TTTGGTACCT AAAATCTGTT AAGTTGTATA TGTTTAAATG GCTTGATTTT ATTATGTTAT
  CTCTGCCCTT TCTACATTTG GAAAATATAG AGAAAAAGGG GAAAATTCAT TTTAATATGT
  CAGATGACTA GATACTTGGG TATATTTTCT ATTCATTGTT CCTTATAAGA TGTAAAAAAA
  W
  ATTTATAAAA TAAATTGTGT GTTTTCACCC CTTATGTCAT GAATAGTTTT TATGACTTTC
  ATAATAGCTG CATTTATATC ATTAGGTTAT ACCATTTGAA TTTTGACCTT TCCTTATCAA
  GGGGCTAATT TCAAATTTTG CACCATTATA AAAACTTACT TTCTTTGTAC TGTTGCTTTC
  GTTTCTTCTG GCCTGTTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395858305	MGP_WTSI_16_32429151	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240536874					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395858305	MGP_WTSI_16_32429151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32247883 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8190	CpG island 8190			1356 bp proximal
Dynlt2b	dynein light chain Tctex-type 2B			mRNA-UTR
				Noncoding-Transcript-Variant
Gm53948	predicted gene, 53948			within coordinates
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform			1856 bp upstream
Rr404779	regulatory region 404779			1690 bp upstream
Rr514694	regulatory region 514694			321 bp proximal
Rr514695	regulatory region 514695			1077 bp proximal
Rr514696	regulatory region 514696			1604 bp proximal
Rr514697	regulatory region 514697			1663 bp proximal
Tssr137979	transcription start site region 137979			1542 bp upstream
Tssr137980	transcription start site region 137980			1830 bp upstream
Tssr137981	transcription start site region 137981			1920 bp upstream
Tssr137982	transcription start site region 137982			1958 bp upstream
Tssr137983	transcription start site region 137983			1978 bp upstream