rs240550640 SNP Detail

Summary

• ID
  rs240550640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAACACG TATTTGGGCC
  CAAAAATTCT ACACTATCAA AACTTATACC GAGTTAATGA AACATCACTT TCTTCCTCTG
  CCCACATCCA CCCTTAAGTC TGTTTAGTTG TTTATCTGTT TACTACCAGG ACTAGGGATT
  AAATATCAGG CCTTAGACAT GCTAAGAAAA TGTCTAACAC AGAGCTCCAT CCTCAGGCCA
  Y
  GTTCTACACT TTATTTTAAG ACCAGCTCTC ACTACACTGG CCTTGAATTC ACTCTAGTCT
  TAGTGGGTCT CTTAAGTATT GATTCTCCTG CCTCAGGTGG TCTAAACATC CTGGTTGGAT
  GTTTCATCAA GTAAAAGGGG ACTCTTAAAA ATAGTCACCC CCTTCTCACT AACTGTGGGA
  TAGGTGATGG AACAGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230124	MGP_WTSI_6_4488312	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240550640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230124	MGP_WTSI_6_4488312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538312 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	332 bp downstream
Tssr1770	transcription start site region 1770	343 bp upstream
Tssr54726	transcription start site region 54726	514 bp downstream
Tssr54727	transcription start site region 54727	433 bp downstream
Tssr54728	transcription start site region 54728	356 bp downstream
Tssr54729	transcription start site region 54729	302 bp downstream
Tssr54730	transcription start site region 54730	304 bp upstream
Tssr54731	transcription start site region 54731	359 bp upstream
Tssr54732	transcription start site region 54732	379 bp upstream
Tssr54733	transcription start site region 54733	1155 bp upstream
Tssr54734	transcription start site region 54734	1166 bp upstream
Tssr54735	transcription start site region 54735	1180 bp upstream
Tssr54736	transcription start site region 54736	1204 bp upstream
Tssr54737	transcription start site region 54737	1226 bp upstream
Tssr54738	transcription start site region 54738	1264 bp upstream
Tssr54739	transcription start site region 54739	1279 bp upstream
Tssr54740	transcription start site region 54740	1343 bp upstream
Tssr54741	transcription start site region 54741	1694 bp upstream