rs240552218 SNP Detail

Summary

• ID
  rs240552218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134271613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCTCCT TCAGATTAGA
  GTTGCTAGGA GCTGCTTGTT CTAAGCTGGA ACTGGCTTCC TTTCTCTTCC CACTTCCTCT
  CTTTCCCCAC TTCAGCAGGC CCAGTTCCTA CTGAACGCCT CAAAGTTGCT GCAAACTAGG
  AGCCTCATTG TGCTGCTCCA GACCCTCAAC ACCCAAAGAG ATCTGGGCTG TTAGAAACAC
  Y
  CAGGGGCTGC AAAGTCTTTT CCTAGGCTTC TCTTACCAGT GCTGACTGTA CATCACCACT
  CCCATCAGCT ACTAGGCACG CTCAATGCGC TCAGACCCTG GCAAAATGGG TGCCCACTTT
  GAATGAATGA ATGAACTACG ATGAACTCCT AGCTCTGCTC CAACGCTCTC CACCAGGTCA
  GAACTGGGGT TTCCGCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457595	CHEV_7_141861567	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240552218					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134271613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	89 bp proximal
Dock1	dedicator of cytokinesis 1	803 bp upstream
Rr656983	regulatory region 656983	51 bp distal
Rr656984	regulatory region 656984	313 bp proximal
Rr656985	regulatory region 656985	814 bp proximal
Tssr69615	transcription start site region 69615	178 bp downstream
Tssr69616	transcription start site region 69616	766 bp upstream
Tssr69617	transcription start site region 69617	783 bp upstream