rs240556139 SNP Detail

Summary

• ID
  rs240556139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:72994391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAT GGCTTCCTCA GTATTTATTA
  Y
  TTGTTATGAA TTTCTCCCTG GGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324097348	CHEV_12_74048604	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240556139					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:72994391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4744	CpG island 4744	1228 bp distal
Gm26709	predicted gene, 26709	within coordinates
Rr265547	regulatory region 265547	1191 bp distal
Tssr113771	transcription start site region 113771	1974 bp downstream
Tssr113772	transcription start site region 113772	1929 bp downstream
Tssr113773	transcription start site region 113773	1920 bp downstream
Tssr113774	transcription start site region 113774	1907 bp downstream
Tssr113775	transcription start site region 113775	1843 bp downstream
Tssr113776	transcription start site region 113776	1817 bp downstream