rs240556254 SNP Detail

Summary

• ID
  rs240556254
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62765252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATACT TAAGAGATAA
  CTTAATTCCA TTTTCCCCAT TCATGCCTAG GTAAATTATC ACACACATAC AGCCCTTGTC
  TTTTAGGAAA AAAACCCAAA ACCCTCATAA TCGCCCTTCA TTATGAGACC TTTTGGCTCA
  CAACCCATCC CAGTTGATTG CAGAATAGAT GCCTGTATTC AATTTACATA ATCAAAAAAA
  T
  TTTTCTTCCT AGAAGGAAAA TCCCTAAAAA AAAAAAGTTA GCTGGGTCAA AATTAAATTT
  CAAGAAACTA AGGAAAAGAA GAAAGAAATA GACCCAGGTT TGGCTTGGGT TCAAGAGGAC
  CACATGGTAA AAGAAAAAGC ACACAGTTTT GTAAGGCCTT TCTCGTGGCT GTGTAGGCAA
  GCATCGTGGA CTGTTGTAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349851967	MGP_WTSI_1_62772667	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240556254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349851967	MGP_WTSI_1_62772667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62765252 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	283 bp downstream
Tssr6999	transcription start site region 6999	59 bp downstream
Tssr7000	transcription start site region 7000	218 bp upstream
Tssr7001	transcription start site region 7001	304 bp upstream
Tssr7002	transcription start site region 7002	385 bp upstream
Tssr7003	transcription start site region 7003	417 bp upstream
Tssr7004	transcription start site region 7004	572 bp upstream
Tssr7005	transcription start site region 7005	632 bp upstream
Tssr7006	transcription start site region 7006	760 bp upstream
Tssr7007	transcription start site region 7007	857 bp upstream
Tssr7008	transcription start site region 7008	880 bp upstream
Tssr7009	transcription start site region 7009	929 bp upstream
Tssr7010	transcription start site region 7010	1028 bp upstream
Tssr7011	transcription start site region 7011	1072 bp upstream