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rs240556371 SNP Detail
Summary
  • ID
    rs240556371
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:30672263 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAACAAAAG CAAACATTTG
    CTAGAGCAGA GGGGGCAGAC TGCTGTGTAG TAACTATTGA CAGTAGCAGG GAAAGTTGCG
    CTTCATTCAA CTGTGCAGAG GTAACTGGGC CTTTTAAGAC GAGAATGAGG GCTGGGCATG
    GGGGCACACA CCTATAATTC TACACTCAAG GCGGAGCCAG GCCGATCTCT AAAACCCTGG
    R
    TTACATGGTG ACATGAGACC TCTTCTAAGA CACGCGCTCG CACGCGTGCA CACAAACACA
    CACACACACA CACACACACA CGCACACTCA CACACGCACC AACAAACAAT GAAGGGAAAA
    TAGGAAAATA GAGAAATGAG AAACGGAATT CCTTAGAAAA ATGAAAAAAA TTACAAAGGT
    TTGGGAGCAT GTTACTATTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss390693734 MGP_WTSI_14_31763492 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240556371 SNP A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss390693734 MGP_WTSI_14_31763492 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:30672263 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6278 CpG island 6278 739 bp proximal
Gm41121 predicted gene, 41121 309 bp downstream
Nek4 NIMA (never in mitosis gene a)-related expressed kinase 4 1071 bp upstream
Rr404045 regulatory region 404045 867 bp upstream
Rr489933 regulatory region 489933 428 bp proximal
Rr489934 regulatory region 489934 967 bp proximal
Rr489935 regulatory region 489935 1126 bp proximal
Rr489936 regulatory region 489936 1449 bp proximal
Tssr124896 transcription start site region 124896 1100 bp upstream
Tssr124897 transcription start site region 124897 1125 bp upstream
Tssr124898 transcription start site region 124898 1146 bp upstream
Tssr124899 transcription start site region 124899 1181 bp upstream
Tssr124900 transcription start site region 124900 1225 bp upstream
Tssr127906 transcription start site region 127906 949 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory