rs240559841 SNP Detail

Summary

• ID
  rs240559841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106016271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAAAGC CGATCGCTGG
  CCGCCGAGAC CATGGAAGCC CGCGCCAAAG ACACGCGCAC TCGGGCGCGC GCACGCTCAC
  ACGAAGACGC AAGGGCCACG TCCGTCTCCG CCGTAGGGGG CGTGCTTAAG CTCGCTGTGG
  GCGGAGCCAA ACGTGCGAAG AGGGGCGGGA TTCGCTGCCA CCCTGCGCCC CTGGACCGCG
  W
  CTGGTCCTAG ACTTCCCCCT CTTCAAACTT CCGCGCTTCT AAAGCGACTG GCGAGGGCGA
  TGAAACCATT TACTGCTTGC CGGTAGTAGA TACATAGGAA GTGAGTACTC CACGGGAGCC
  CAGGGTTCGG GGCACGCAGT CCACAAAGAG AGCAGATGTC TGCATAGGTG AGATGCTGCC
  AGAATACTAG GATTCAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375910007	MGP_WTSI_8_107813539	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240559841					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375910007	MGP_WTSI_8_107813539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106016271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	within coordinates
Exoc3l	exocyst complex component 3-like	285 bp downstream
Gm20163	predicted gene, 20163	within coordinates
Matcap1	microtubule associated tyrosine carboxypeptidase 1	111 bp upstream
Rr401088	regulatory region 401088	306 bp downstream
Rr401089	regulatory region 401089	within coordinates
Rr668839	regulatory region 668839	600 bp distal
Rr668840	regulatory region 668840	446 bp distal
Rr668841	regulatory region 668841	122 bp distal
Rr668842	regulatory region 668842	353 bp distal
Rr668843	regulatory region 668843	227 bp distal
Rr668844	regulatory region 668844	42 bp distal
Rr668845	regulatory region 668845	within coordinates
Rr668846	regulatory region 668846	215 bp proximal
Rr668847	regulatory region 668847	618 bp proximal
Rr668848	regulatory region 668848	1481 bp proximal
Rr668849	regulatory region 668849	1716 bp proximal
Rr668850	regulatory region 668850	1834 bp proximal
Tssr79123	transcription start site region 79123	344 bp upstream
Tssr82634	transcription start site region 82634	556 bp upstream
Tssr82635	transcription start site region 82635	525 bp upstream
Tssr82636	transcription start site region 82636	501 bp upstream
Tssr82637	transcription start site region 82637	98 bp upstream
Tssr82638	transcription start site region 82638	236 bp downstream