rs240566406 SNP Detail

Summary

• ID
  rs240566406
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74699804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCAGCC CATCGGCCGA
  GTTGACGTCA CGGGGAAGGC AGAGCACAAG TAGTCATAAG ATACCCTTGG CACATGCGCA
  GATTATTTGT TTACCACTTA GAACACAGCT GTCAGCGCCA TCTTGTAACG GCGAATGTGG
  GCGCGGCTCC CAACATTTTT CTTCAGCTCC AGCACTCCCA TTTTGTCTAA GAAAGTTCAT
  T
  TATACTGTAT ATTGGTTAAA ATTCTGAATT TATCTGATTC TATAGCATTA CTCAATTGTT
  TTCCTCTATA TCCTGTATAC TGAAGTTAGA GTCAATGCTT GATTAGATTC AGCTTTTAAA
  TTGTTAAAAT TTAACATTTT GTAAAATAAG CCATACTTTA TAAATATTGC TGTGTAATCC
  AAATCTCATC AGGAGACAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350128217	MGP_WTSI_1_74707219	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240566406					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350128217	MGP_WTSI_1_74707219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74699804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	794 bp proximal
Gm70804	predicted gene, 70804	within coordinates
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	294 bp proximal
Rr413231	regulatory region 413231	750 bp proximal
Rr413232	regulatory region 413232	1111 bp proximal
Rr413233	regulatory region 413233	1153 bp proximal
Tssr7442	transcription start site region 7442	905 bp upstream
Tssr7443	transcription start site region 7443	988 bp upstream
Tssr7444	transcription start site region 7444	1053 bp upstream
Tssr7445	transcription start site region 7445	1069 bp upstream
Tssr7446	transcription start site region 7446	1149 bp upstream
Tssr7447	transcription start site region 7447	1451 bp upstream
Ttll4	tubulin tyrosine ligase-like family, member 4	1000 bp upstream