rs240567643 SNP Detail

Summary

• ID
  rs240567643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:129471550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GATCCAGGAC AAGGAAAAGA
  Y
  ATGGGAAGGG GGAGGGGATA GCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320505294	CHEV_2_129455366	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240567643					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129471550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Sirpa	signal-regulatory protein alpha			Intron
				Noncoding-Transcript-Variant
Tssr20162	transcription start site region 20162			351 bp upstream
Tssr20163	transcription start site region 20163			371 bp upstream
Tssr20164	transcription start site region 20164			432 bp upstream
Tssr20165	transcription start site region 20165			462 bp upstream
Tssr20166	transcription start site region 20166			481 bp upstream
Tssr20167	transcription start site region 20167			555 bp upstream
Tssr20168	transcription start site region 20168			681 bp upstream
Tssr20169	transcription start site region 20169			777 bp upstream
Tssr20170	transcription start site region 20170			945 bp upstream
Tssr20171	transcription start site region 20171			957 bp upstream
Tssr20172	transcription start site region 20172			1025 bp upstream
Tssr20173	transcription start site region 20173			1057 bp upstream
Tssr20174	transcription start site region 20174			1102 bp upstream
Tssr20175	transcription start site region 20175			1288 bp upstream
Tssr20176	transcription start site region 20176			1306 bp upstream
Tssr20177	transcription start site region 20177			1638 bp upstream
Tssr20178	transcription start site region 20178			1868 bp upstream
Tssr26273	transcription start site region 26273			352 bp downstream
Tssr26274	transcription start site region 26274			412 bp downstream
Tssr26275	transcription start site region 26275			992 bp downstream