rs240568135 SNP Detail

Summary

• ID
  rs240568135
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121849268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG GCCTACTGTG TGCCAGGCCC
  S
  GATTGCAGGT CCCCGCCCCG AAGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321668345	CHEV_5_122161214	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240568135					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121849268 () rs orientation: forward

Symbol	Name	Function Class
1700064N11Rik	RIKEN cDNA 1700064N11 gene	within coordinates
Atxn2	ataxin 2	526 bp upstream
Cpgi16531	CpG island 16531	within coordinates
Rr619651	regulatory region 619651	within coordinates
Rr619652	regulatory region 619652	250 bp proximal
Rr619653	regulatory region 619653	454 bp proximal
Rr619654	regulatory region 619654	1804 bp proximal
Tssr48591	transcription start site region 48591	580 bp upstream
Tssr48592	transcription start site region 48592	703 bp upstream
Tssr48593	transcription start site region 48593	834 bp upstream
Tssr48594	transcription start site region 48594	863 bp upstream
Tssr48595	transcription start site region 48595	1262 bp upstream
Tssr53053	transcription start site region 53053	250 bp downstream