rs240571103 SNP Detail

Summary

• ID
  rs240571103
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55251754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAACAGC AAATAAATAT CACAGGCAAA
  CCCTCTGTCC CATTTTATGT AGTTCCCAAA TAGGTAGAAA CTAGAATGTT TCACCCAGAA
  TTCAAGATAG AAAAAGGATT ACTCTTTTTT GCTTaaaaaa aaaaaacaaa aaacaaaaaa
  M
  aaaaaaaCAA TCACTTTTAt gtatgcctat gtctgtatat agggaagtca gaaggaacta
  aaattcccct ggggctggag ttaaaggtag ttgtgagctg tcttgtctgg gtgctgggaa
  tggaacgttg gtcatctgca agaataatat                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641560	CHEV_14_55633134	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240571103					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55251754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	337 bp proximal
Gm63342	predicted gene, 63342	1083 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	1157 bp upstream
Rr369830	regulatory region 369830	788 bp upstream
Rr369831	regulatory region 369831	1007 bp upstream
Rr404108	regulatory region 404108	within coordinates
Rr492392	regulatory region 492392	667 bp proximal
Rr492393	regulatory region 492393	849 bp proximal
Rr492394	regulatory region 492394	1168 bp proximal
Rr492395	regulatory region 492395	1494 bp proximal
Rr492396	regulatory region 492396	1861 bp proximal
Tssr125743	transcription start site region 125743	1233 bp upstream