rs240575609 SNP Detail

Summary

• ID
  rs240575609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43629348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAATGA CGCCCGGGGC
  GCAGAAGGCA GACCCATGGT TTTTGAGACC TGACCGGTGT ACATGACCCA CGGCCCTGAG
  GCCTTAAGAA GCCATTCTGA GGCTAGAGTT GCCTCTGAAG AATTTTACTT TGTAAACATT
  TAAATAAATT ACATGAGTAG AGCCTTTCTT GATATAAAAC GCAAACATGC AAGATGAATA
  Y
  AATATATCAA GGTGCAGTAG CCTTGCTTTG ATGGCAGTGG GGGATGAAAC ATGACAGAGT
  CGCATGCTCT TATCTTTAAA TTGCTGCTGC ACAGCTTAGG AACTTCTACA ATACCCATAA
  GTCCCTCTTC TTGCCTTGAC GTTTCAGACT CTGTGTGATA CCTGTTTGCT CTCTGCTTTA
  AGACACATAA ACACTTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269130	CHEV_2_43594856	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240575609					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43629348 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	1361 bp downstream
Rr556296	regulatory region 556296	1115 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	188 bp upstream
Tssr23873	transcription start site region 23873	656 bp upstream
Tssr23874	transcription start site region 23874	307 bp upstream