rs240580347 SNP Detail

Summary

• ID
  rs240580347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68292941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTAAAC TGGGAATGAA
  GGGCCACAGA GAGCCGACTT GGTTGGCTGG TGTGCACAAA TATGTTCAAG TGTGGTCGCA
  CGTGTCATGC GTATGTATGG CAGTCAGAGG TTGACGTTGG GTGTCCTTCT TAATCATGTT
  CCACTTTAAT CACCGAGGCA GGATCTCTCA TTAGACTTGG TAGCTGGCTC CCCCCCCACC
  Y
  CACCCCACCC CGTACCCATT ACTTCCTCCT AGGCACTGGG ATTACAGGCA AGCTATCGCT
  TCTGCATGGG TGCAGGGGAC AGAAAGCTTT TCGTGCACCA AGCCACTTGG CTAACTTTCC
  TCCTTTGTGT GATTAGCTTG CATCCACTGG CTACACGACA CTTGTAGAGT GCCCTGAGAG
  CACCAGGTTA TTGCCCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LP/J	MA/MyJ	RIIIS/J	SEA/GnJ	WSB/EiJ
ss401058568	MGP_WTSI_18_68319524	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LP/J	MA/MyJ	RIIIS/J	SEA/GnJ	WSB/EiJ
rs240580347					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401058568	MGP_WTSI_18_68319524	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68292941 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad4	low density lipoprotein receptor class A domain containing 4	within coordinates
Rr393849	regulatory region 393849	1488 bp downstream
Rr540015	regulatory region 540015	1842 bp distal
Rr540016	regulatory region 540016	within coordinates
Tssr151775	transcription start site region 151775	316 bp upstream