rs240588366 SNP Detail

Summary

• ID
  rs240588366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42310516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTAGTTG ATGCACCTGC TGTACTCCCT CCCTGTCTTC
  AGGATAAAAC GAGGAACACG ACTCTAGGGC ATCCCAGTCC CGGTGCTCTC GGCATCCTCT
  Y
  CCCCCCCCCC CCCCCGCAAC TCCTCCCCTC CTCCAGCGAG CCCCAAGCAG AGGAAATGAT
  TTTTCCTATG AAATGAGTCT GGATCTGGTG TCCGTGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383143965	MGP_WTSI_11_42233191	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240588366					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383143965	MGP_WTSI_11_42233191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42310516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	836 bp distal
Cpgi2744	CpG island 2744	138 bp proximal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	68 bp upstream
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	within coordinates
Rr445406	regulatory region 445406	1171 bp proximal
Tssr100974	transcription start site region 100974	12 bp upstream
Tssr100975	transcription start site region 100975	40 bp upstream
Tssr100976	transcription start site region 100976	248 bp upstream
Tssr100977	transcription start site region 100977	748 bp upstream
Tssr100978	transcription start site region 100978	1069 bp upstream
Tssr100979	transcription start site region 100979	1140 bp upstream
Tssr100980	transcription start site region 100980	1544 bp upstream
Tssr100981	transcription start site region 100981	1569 bp upstream
Tssr100982	transcription start site region 100982	1596 bp upstream
Tssr100983	transcription start site region 100983	1633 bp upstream