rs240588562 SNP Detail

Summary

• ID
  rs240588562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167620865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGGGGT TCATGACAGC
  TTTCCCAGCC TTCTGGGAGT CAGAGCATTT AGAGTTTGAT TTATCACTGA GTTTAAGGGT
  GCCCTACTGC GGGATGGGCA CAGCGCAGCT TTCTGGAGGA ACAGGAGAGG CAGGGCCTCT
  GGCTTTGCTG TCTGTCTCCA ACCCAGGGAG AGATGAAACA CTGGAGCAAA GGGGACCGGG
  Y
  GTGCTGCCCA CGAGCATGAG CGCCGTGAGG AGGCCCGTGA GTAGGGACGT GCGGAGCCAC
  AGGGGAGGGT ATGCTCAGCC TGGCTGAGGC CTCACAAGGG GACAGCACAA GGCTTAATCA
  GCGTCCCTGA AAATGTTTTG TGTGTTTGTT TTTTTATATC AAGGTATATG TATTTGTGTA
  ATTAGGATAT GTGAATTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356511872	MGP_WTSI_2_167604445	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240588562					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356511872	MGP_WTSI_2_167604445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167620865 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	within coordinates
Cpgi12755	CpG island 12755	943 bp distal
Gm14321	predicted gene 14321	within coordinates
Gm32287	predicted gene, 32287	538 bp upstream
Rr570741	regulatory region 570741	1399 bp distal
Rr570742	regulatory region 570742	1169 bp distal
Rr570743	regulatory region 570743	668 bp distal
Rr570744	regulatory region 570744	48 bp distal
Tssr774	transcription start site region 774	938 bp upstream
Tssr21850	transcription start site region 21850	1432 bp downstream
Tssr21851	transcription start site region 21851	839 bp downstream
Tssr21852	transcription start site region 21852	776 bp downstream
Tssr27806	transcription start site region 27806	1663 bp upstream
Tssr27807	transcription start site region 27807	1035 bp upstream
Tssr27808	transcription start site region 27808	1011 bp upstream