rs240601739 SNP Detail

Summary

• ID
  rs240601739
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85868530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGTGAG TTTTACCTCA
  GTTGCATATA AAGGTACCTA ATAACATGCT TACACTACCC TCTCTTCACT AAGAATTTTG
  GTGATTTTAA TTTACGGTAT TTTGTGCTTT AATTGCTTGC AGACCAGGCC TTGCAGGCTC
  TCCCAGTAGC TGGGTACTCC AGGCTTAAGC CTTTGAAAAG GAACAGTGTC TTTCAGTCTC
  K
  CCTTCACCCA GGGCATGGCT TGGGGCACAT GTGCATGAGC CCATCACTAG CTCTTTCATA
  AGCAGAGATG AAGTACGCCT TTGTATGCAA AACTAAAATT GAACCCTCTG GTGATGTCAA
  GAAATTGGTC TTTTGGGTCC AGAAAGGAGT GGTGCTGTGC AAACTAGCAG GATCCTGTTA
  ATGAACAAGG ATTGACCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381126417	MGP_WTSI_10_85495411	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T	T	T	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240601739					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T	T	T	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381126417	MGP_WTSI_10_85495411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85868530 () rs orientation: forward

Symbol	Name	Function Class
Fbxo7	F-box protein 7	within coordinates
Rr220687	regulatory region 220687	1470 bp proximal
Rr229206	regulatory region 229206	within coordinates
Tssr94946	transcription start site region 94946	153 bp upstream
Tssr94947	transcription start site region 94947	296 bp upstream
Tssr94948	transcription start site region 94948	328 bp upstream
Tssr94949	transcription start site region 94949	356 bp upstream
Tssr94950	transcription start site region 94950	372 bp upstream
Tssr94951	transcription start site region 94951	391 bp upstream