rs240607394 SNP Detail

Summary

• ID
  rs240607394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137639270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGGAAG GGGCCTCCCT
  CACATCGCTG CTGTCCTTCA CGCACTTCTG GAACAGCCTT AGGGGTAGAG GTTGGGGGCT
  CTGGGCCCCA ACTACCATCG GACCTGTCCT GGGAGCAGAT GACACCTGGG CCCAGCCAAT
  TAACAAGGAC TTGGTGACCA TGGTCTTGTG TGTAGCACTG GCCTTGGATA TCCCCCTGCC
  S
  TTAGGCTGCT TCGGGTACAG CCCCCATCTG GGTGAAGAGC GTTGTGTCAA ACACAATAAA
  AAGAAGCCCA AAGGCCTGTA GGTTGGTCCT CAGGTGTGTG CCTGCCTGTC CATGAATGCG
  CGAGCTTTTT GGGGACCTGA GTCCTCTACT GTGAGTCCCA GTGTAGACTG CTATATTTCT
  GTGCCTGGCA GAGGAGCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702663	CHEV_5_138082236	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240607394					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137639270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	107 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Rr622927	regulatory region 622927	131 bp proximal
Rr622928	regulatory region 622928	223 bp proximal
Rr622929	regulatory region 622929	434 bp proximal
Rr622930	regulatory region 622930	563 bp proximal
Sap25	sin3 associated polypeptide	465 bp upstream
Tssr49364	transcription start site region 49364	268 bp upstream