rs240607924 SNP Detail

Summary

• ID
  rs240607924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143013001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGGGGGC GGCCCCTCCG
  CGACCCCCGT GGGGGACGCC AGACTCACCT AACTCATCTC AGACGTTTGC GCGGGGTCTG
  CTCCACCGCG CCCACCCCAG GAGCCACGTT TGGAGAGGGA CACCCTGGAG GGACGTCGTT
  CGACGCCTTG TTCTCCTGCG CAGTTCTCTT GCGCTTGGCG AAGAAGTCTG CGGGCGACAA
  Y
  GCGCGTCGGT CAGGGCGGGG CCGGCCCAGA GACCCGCGAG GAGACCCGCG GAGTGCGCAG
  GGCGCGGGGC CGGGGTGGGG GCGCCATCCC CGCCCGCGCC GAGGTCCGCG GCGGGTCAGC
  TTTGTTTACG TCGCCGCGCA ATGTGCTGTG TAAGCATTTC CCCTTGTCCC GCGGCCAAGC
  CCCCCGGGGC TGCCGCCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373469257	MGP_WTSI_7_150645169	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240607924					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373469257	MGP_WTSI_7_150645169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143013001 () rs orientation: forward

Symbol	Name	Function Class
Cdkn1c	cyclin dependent kinase inhibitor 1C	within coordinates
Cpgi19981	CpG island 19981	within coordinates
Gm44732	predicted gene 44732	485 bp upstream
Rr658423	regulatory region 658423	within coordinates
Rr658424	regulatory region 658424	1035 bp proximal
Rr658425	regulatory region 658425	1149 bp proximal
Rr658426	regulatory region 658426	1722 bp proximal
Tssr70288	transcription start site region 70288	536 bp downstream
Tssr70289	transcription start site region 70289	588 bp upstream
Tssr75936	transcription start site region 75936	747 bp upstream
Tssr75937	transcription start site region 75937	644 bp upstream
Tssr75938	transcription start site region 75938	470 bp upstream
Tssr75939	transcription start site region 75939	443 bp upstream
Tssr75940	transcription start site region 75940	408 bp upstream
Tssr75941	transcription start site region 75941	305 bp upstream
Tssr75942	transcription start site region 75942	70 bp downstream
Tssr75943	transcription start site region 75943	117 bp downstream
Tssr75944	transcription start site region 75944	972 bp downstream
Tssr75945	transcription start site region 75945	1443 bp downstream
Tssr75946	transcription start site region 75946	1725 bp downstream