rs240613416 SNP Detail

Summary

• ID
  rs240613416
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90183104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCTTCT GCTGCCTTCC
  AGAGGGCGCC TGCAGCCCGC CGCGCGCTCC TCTCCGGCGG GAGCGGCCCC GGGGAGCACC
  GCTGAGGACC CGGCGGGCCA GAGGGCGGCG GCGCCCGGGC TTGGGGGACT CCGCCACCGG
  ACTGTGCCCC TCTCGGACCA GCAGCCGCTG TTCCCTCTCA CAGCCGATCG GGGCACCAGA
  M
  GGGACCGCGG GCGCGATCTG GGCGATCGAT CCTCGGAGGA CGAACTTCTC GGGGGCGGGT
  CCCCGGTCGC CCGGTCGCCA GCTATTGTCT GCGCGCGGCG CTAGCACAGA GGCGCGGGGG
  GCGTGAGCAC AGAGACCCGG GCCGGGCGGG GCCGGGTCCA GGGCGGCGGC AGGAGGAGCC
  AGGGCAGCCC CGGGAGCCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397293384	MGP_WTSI_16_90386461	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240613416					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397293384	MGP_WTSI_16_90386461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90183104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	within coordinates
Gm60085	predicted gene, 60085	205 bp downstream
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519118	regulatory region 519118	1819 bp distal
Rr519119	regulatory region 519119	1087 bp distal
Rr519120	regulatory region 519120	193 bp distal
Rr519121	regulatory region 519121	278 bp proximal
Rr519122	regulatory region 519122	735 bp proximal
Tssr139286	transcription start site region 139286	331 bp downstream
Tssr139287	transcription start site region 139287	272 bp downstream
Tssr139288	transcription start site region 139288	247 bp downstream
Tssr139289	transcription start site region 139289	193 bp downstream
Tssr139290	transcription start site region 139290	164 bp downstream
Tssr139291	transcription start site region 139291	166 bp upstream