rs240614008 SNP Detail

Summary

• ID
  rs240614008
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110678911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCCCA ACTTGAGATT
  TCCATCATGT ATTTTAAAAT CATTATTTTT TGACCCAATC CCCCCATGTT CTCTAATTTA
  TTCCTGAACT TAAGACTTGC CTTGGAGTGT GGCTGACATA TCAACTGATA CTCTCCGGTG
  GGGGGGGGGG GGGATCCCTC TCCCAGCAGC ATGTATTTGC TAGTAGCTTC TTGGCTAGGA
  S
  TAGGGCTTTT GTCTGGCTTG AGCTTATGCA AATCTTGTGC ATGGTATTAT AGAAGTGTTC
  AGTTTTCATC CAGAGATGCT GGAATCACTT CTCAGTTACA ACATCTGAAT TGTATTTGGG
  CTTTCCCGCT GTTTCACAAG AAACTTCTCT AAATACTCAA GAGCAGTAGG TTTTCATTAT
  ATGGAAGTGA CCATGAGTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719400	MGP_WTSI_7_118223218	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240614008					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719400	MGP_WTSI_7_118223218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110678911 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Rr166519	regulatory region 166519	89 bp proximal
Rr166520	regulatory region 166520	489 bp proximal
Rr381309	regulatory region 381309	1396 bp upstream
Tssr2372	transcription start site region 2372	613 bp downstream
Tssr68538	transcription start site region 68538	471 bp upstream
Tssr74291	transcription start site region 74291	1565 bp upstream
Tssr74292	transcription start site region 74292	1149 bp upstream
Tssr74293	transcription start site region 74293	1136 bp upstream
Tssr74294	transcription start site region 74294	367 bp upstream
Tssr74295	transcription start site region 74295	585 bp downstream
Tssr74296	transcription start site region 74296	1227 bp downstream
Tssr74297	transcription start site region 74297	1892 bp downstream