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rs240615214 SNP Detail
Summary
  • ID
    rs240615214
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130452 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCTTCTGT TCCTCAATTC
TCCTCCTCCC TGCTTCTTCA TTTCTTTGAA TACTATCCAT CTTCATCCCT CTTTCTCTTC
ATTCCTCTCT TCTACCCTTT CTTTTCCTTC TGTTCCTCCA CATGCATCCC TGTGGTTTTC
CACACATTCT CTCTCCTCTC TTTCCCCTTC ACCCTCTACC TCCTCCTCTG TCTTTCCTTG
Y
CCTTTGGTTT CCTCTACAGT GTCTCATCCA ATATCTCCTG CTGTTCTTCC TTCTCTCTGG
CATTTACACT GTTTCTGCTT CTGTTTCTCC TAATTATTTC TACTCCGTCT CCTCTATCCC
TCCTCTCCTT TAACTGCTCT ATCCCCTCCC TTCCCTTTCA CCCCTCCTTC TCTGTCTCCT
CTATTCCTCC CTTTTTGCTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156152 MGP_WTSI_7_51736398 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240615214 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156152 MGP_WTSI_7_51736398 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130452 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1556 bp proximal
Tssr2228 transcription start site region 2228 945 bp downstream
Tssr2229 transcription start site region 2229 670 bp downstream
Tssr2230 transcription start site region 2230 487 bp downstream
Tssr2231 transcription start site region 2231 360 bp downstream
Tssr2232 transcription start site region 2232 186 bp downstream
Tssr2233 transcription start site region 2233 141 bp downstream
Tssr2234 transcription start site region 2234 5 bp upstream
Tssr2235 transcription start site region 2235 639 bp upstream
Tssr66295 transcription start site region 66295 1793 bp downstream
Tssr66296 transcription start site region 66296 1622 bp downstream
Tssr66297 transcription start site region 66297 1598 bp downstream
Tssr66298 transcription start site region 66298 1543 bp downstream
Tssr66299 transcription start site region 66299 1523 bp downstream
Tssr66300 transcription start site region 66300 1500 bp downstream
Tssr66301 transcription start site region 66301 1484 bp downstream
Tssr66302 transcription start site region 66302 1443 bp downstream
Tssr66303 transcription start site region 66303 1434 bp downstream
Tssr66304 transcription start site region 66304 1429 bp downstream
Tssr66305 transcription start site region 66305 1390 bp downstream
Tssr66306 transcription start site region 66306 1336 bp downstream
Tssr66307 transcription start site region 66307 1287 bp downstream
Tssr66308 transcription start site region 66308 1270 bp downstream
Tssr66309 transcription start site region 66309 1220 bp downstream
Tssr66310 transcription start site region 66310 1151 bp downstream
Tssr66311 transcription start site region 66311 1128 bp downstream
Tssr66312 transcription start site region 66312 1109 bp downstream
Tssr66313 transcription start site region 66313 1099 bp downstream
Tssr66314 transcription start site region 66314 1081 bp downstream
Tssr66315 transcription start site region 66315 1074 bp downstream
Tssr66316 transcription start site region 66316 1009 bp downstream
Tssr66317 transcription start site region 66317 993 bp downstream
Tssr66318 transcription start site region 66318 952 bp downstream
Tssr66319 transcription start site region 66319 924 bp downstream
Tssr66320 transcription start site region 66320 900 bp downstream
Tssr66321 transcription start site region 66321 876 bp downstream
Tssr66322 transcription start site region 66322 860 bp downstream
Tssr66323 transcription start site region 66323 822 bp downstream
Tssr66324 transcription start site region 66324 769 bp downstream
Tssr66325 transcription start site region 66325 728 bp downstream
Tssr66326 transcription start site region 66326 718 bp downstream
Tssr66327 transcription start site region 66327 698 bp downstream
Tssr66328 transcription start site region 66328 680 bp downstream
Tssr66329 transcription start site region 66329 641 bp downstream
Tssr66330 transcription start site region 66330 628 bp downstream
Tssr66331 transcription start site region 66331 614 bp downstream
Tssr66332 transcription start site region 66332 581 bp downstream
Tssr66333 transcription start site region 66333 546 bp downstream
Tssr66334 transcription start site region 66334 540 bp downstream
Tssr66335 transcription start site region 66335 529 bp downstream
Tssr66336 transcription start site region 66336 515 bp downstream
Tssr66337 transcription start site region 66337 499 bp downstream
Tssr66338 transcription start site region 66338 415 bp downstream
Tssr66339 transcription start site region 66339 383 bp downstream
Tssr66340 transcription start site region 66340 316 bp downstream
Tssr66341 transcription start site region 66341 267 bp downstream
Tssr66342 transcription start site region 66342 238 bp downstream
Tssr66343 transcription start site region 66343 212 bp downstream
Tssr66344 transcription start site region 66344 55 bp downstream
Tssr66345 transcription start site region 66345 18 bp downstream
Tssr66346 transcription start site region 66346 17 bp upstream
Tssr66347 transcription start site region 66347 55 bp upstream
Tssr66348 transcription start site region 66348 96 bp upstream
Tssr66349 transcription start site region 66349 120 bp upstream
Tssr66350 transcription start site region 66350 148 bp upstream
Tssr66351 transcription start site region 66351 156 bp upstream
Tssr66352 transcription start site region 66352 192 bp upstream
Tssr66353 transcription start site region 66353 266 bp upstream
Tssr66354 transcription start site region 66354 280 bp upstream
Tssr66355 transcription start site region 66355 307 bp upstream
Tssr66356 transcription start site region 66356 324 bp upstream
Tssr66357 transcription start site region 66357 338 bp upstream
Tssr66358 transcription start site region 66358 350 bp upstream
Tssr66359 transcription start site region 66359 376 bp upstream
Tssr66360 transcription start site region 66360 388 bp upstream
Tssr66361 transcription start site region 66361 414 bp upstream
Tssr66362 transcription start site region 66362 446 bp upstream
Tssr66363 transcription start site region 66363 463 bp upstream
Tssr66364 transcription start site region 66364 496 bp upstream
Tssr66365 transcription start site region 66365 516 bp upstream
Tssr66366 transcription start site region 66366 536 bp upstream
Tssr66367 transcription start site region 66367 564 bp upstream
Tssr66368 transcription start site region 66368 586 bp upstream
Tssr66369 transcription start site region 66369 620 bp upstream
Tssr66370 transcription start site region 66370 662 bp upstream
Tssr66371 transcription start site region 66371 1087 bp upstream
Tssr66372 transcription start site region 66372 1250 bp upstream
Tssr66373 transcription start site region 66373 1540 bp upstream
Tssr66374 transcription start site region 66374 1598 bp upstream
Tssr66375 transcription start site region 66375 1609 bp upstream
Tssr66376 transcription start site region 66376 1622 bp upstream
Tssr66377 transcription start site region 66377 1661 bp upstream
Tssr66378 transcription start site region 66378 1683 bp upstream
Tssr66379 transcription start site region 66379 1695 bp upstream
Tssr66380 transcription start site region 66380 1728 bp upstream
Tssr66381 transcription start site region 66381 1747 bp upstream
Tssr66382 transcription start site region 66382 1771 bp upstream
Tssr66383 transcription start site region 66383 1881 bp upstream
Tssr66384 transcription start site region 66384 1979 bp upstream
Tssr72202 transcription start site region 72202 1220 bp upstream
Tssr72203 transcription start site region 72203 840 bp upstream
Tssr72204 transcription start site region 72204 240 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory