rs240622198 SNP Detail

Summary

• ID
  rs240622198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76374572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCTCAG ACCCGGCTGG
  GGGCGGGCCC GGGCCGGAGC ACGTGTCCAT TCCGGCCTCA CGACGGAGGT GGGCGAGGGC
  TTAGCCGCGG CGCTCCACCC AGAGGCGCCG GGGCGGGGGT CTGCGGGCGT GGCACGCCGC
  GCGGCCTTCC GCGATCCTCC ACGAGCCCGG TGGGAGCGCG CCGGACACGA ACTCAAGCGC
  W
  ACCGCGGGCG TACCAACCCA CCCGGCCTCG CCTCGCCTCA CGCTCGACGG GGAAGGCGGA
  ACCAATCAGC GAGCGACGTT TCCCTTCCGA TTCCAGGCCC CCGACGCGGT GCTCACACCC
  CGGGCTCCCC GGTCGCTGAT TGGCTGCGCG CGCCGCCGGT CCCGGCCGGA GGCGGGAGTC
  GGCGCCCCGC GCCTGCCCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401278424	MGP_WTSI_18_76401155	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240622198					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401278424	MGP_WTSI_18_76401155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76374572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	within coordinates
Rr540993	regulatory region 540993	211 bp proximal
Smad2	SMAD family member 2	79 bp upstream
Tssr151989	transcription start site region 151989	187 bp downstream
Tssr151990	transcription start site region 151990	139 bp downstream
Tssr151991	transcription start site region 151991	37 bp downstream
Tssr151992	transcription start site region 151992	159 bp upstream
Tssr151993	transcription start site region 151993	391 bp upstream
Tssr151994	transcription start site region 151994	634 bp upstream