rs240625294 SNP Detail

Summary

• ID
  rs240625294
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70991150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAGTGGC TGCAGTTTTC AGGGTGCTCA
  CTCCAGCCTA CACTGAGCTG AGATGCCCCA GAGTGGCTCT TTATAAGCCT GAATGAAGTG
  TCATACATCT CAGAAAGGAC AGGGCGGAAT CAAGATGAAC TGATCTGTGT ATGCATAtcc
  M
  tctctctctc tctctgctcc ctccctttct ctctcAGTCG TTCATATGAA AAATATTGTC
  AAAGAGTACA GTTTTGTTGA CTTACTGTTT CATTCTTTTA TAATTCCACG CACCTACACT
  ATGTTCTTTT ATTAAAGCCT CCCATTATCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417499	CHEV_13_70981909	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240625294					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70991150 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1220 bp upstream
Cpgi5821	CpG island 5821	1191 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	1315 bp upstream
Tssr123159	transcription start site region 123159	1277 bp upstream
Tssr123160	transcription start site region 123160	1248 bp upstream
Tssr123161	transcription start site region 123161	1221 bp upstream