rs240629487 SNP Detail

Summary

• ID
  rs240629487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGCAAC CCAGCTCTGC
  GGGGGATCTC TTCCCCTCAA TGGAAGTCAG GGTACTTGGT CCTAATCTGA GGACTCCTCT
  GCCTCACATC TTCCCGAGTT TGGAAACAGG TCCTCATGCT GACAAACGCT TTACTCCCTG
  AACCCAAGTG CCTCATTTCA AAAGAAATCT TAGGGTCTAG GGTGTGGGGG GAGGGGGGAG
  R
  CGGGGGGGGG GGGGAGGCGG GGGGAGGGGG CGGGTAGCTC AAAGGTAGTG CTTTGCATGT
  GAGACCTCCT GAGATTCATT CCCCAGAATT GCTAAGAAAA TCACTGGAAA CCTGACGCTC
  CTTGTTCTTT TCCACAGAAA ATATCCTCTT TCCAAGGCCC TACCTCTCTA GGAGTCTTGC
  CGAATTCTCT CCCAAAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	MA/MyJ	NON/ShiLtJ	RIIIS/J
ss350472905	MGP_WTSI_1_93146026	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	MA/MyJ	NON/ShiLtJ	RIIIS/J
rs240629487					SNP	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350472905	MGP_WTSI_1_93146026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	447 bp proximal
Rr366958	regulatory region 366958	496 bp upstream
Rr415585	regulatory region 415585	1508 bp distal
Rr415586	regulatory region 415586	113 bp distal
Rr415587	regulatory region 415587	372 bp proximal
Rr415588	regulatory region 415588	1128 bp proximal
Tssr8065	transcription start site region 8065	744 bp upstream
Tssr8066	transcription start site region 8066	848 bp upstream
Tssr8067	transcription start site region 8067	862 bp upstream
Tssr8068	transcription start site region 8068	1033 bp upstream
Tssr8069	transcription start site region 8069	1126 bp upstream
Tssr12938	transcription start site region 12938	591 bp downstream
Tssr12939	transcription start site region 12939	1923 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	241 bp upstream