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rs240633397 SNP Detail
Summary
  • ID
    rs240633397
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149981885 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTTTAAAT ATGTGTTACC
TGAAACTGAA AGGAAATCAG CATTCATTCC TCTACATAAG CCAGTGAGAA GGGAAATGAA
TTTTGATATC TTTATACTTG AATTTCAGAT CATGATTAGC TTAACAAGAA CCAAGGAAAA
ATGTATGAAT ATGTGAGTGT TGTTACAAGA TGAAAAATGC TGCAGGTATC AACACTGTTG
K
TTACAACTGT GTCTTCTTTA CTATGATAGG AGCATGTAAT GTGGAATTCT TCTTAAATCT
TGCATATCTT TATCTCATCA AACAAAGGGG TCCAAGTTCA GTTTTAAATA AGCATTTAAG
GCAGATACTG ACAACAATCT CATTTTTTAA AATGTTGTCT TGAGACAAAT AATTTGAAAT
TTCTAAATTG GGAGTTTGAA                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888771 MGP_WTSI_1_151953264 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240633397 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888771 MGP_WTSI_1_151953264 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149981885 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 1485 bp distal
Rr24983 regulatory region 24983 1589 bp distal
Tssr9256 transcription start site region 9256 1847 bp downstream
Tssr9257 transcription start site region 9257 1813 bp downstream
Tssr9258 transcription start site region 9258 1797 bp downstream
Tssr9259 transcription start site region 9259 1740 bp downstream
Tssr9260 transcription start site region 9260 1688 bp downstream
Tssr9261 transcription start site region 9261 1669 bp downstream
Tssr9262 transcription start site region 9262 1648 bp downstream
Tssr9263 transcription start site region 9263 1636 bp downstream
Tssr9264 transcription start site region 9264 1587 bp downstream
Tssr9265 transcription start site region 9265 1560 bp downstream
Tssr9266 transcription start site region 9266 1471 bp downstream
Tssr9267 transcription start site region 9267 1136 bp downstream
Tssr9268 transcription start site region 9268 1066 bp downstream
Tssr9269 transcription start site region 9269 729 bp downstream
Tssr9270 transcription start site region 9270 698 bp downstream
Tssr9271 transcription start site region 9271 675 bp downstream
Tssr9272 transcription start site region 9272 644 bp downstream
Tssr9273 transcription start site region 9273 600 bp downstream
Tssr9274 transcription start site region 9274 580 bp downstream
Tssr9275 transcription start site region 9275 548 bp downstream
Tssr9276 transcription start site region 9276 534 bp downstream
Tssr9277 transcription start site region 9277 478 bp downstream
Tssr9278 transcription start site region 9278 457 bp downstream
Tssr9279 transcription start site region 9279 439 bp downstream
Tssr9280 transcription start site region 9280 339 bp downstream
Tssr9281 transcription start site region 9281 319 bp downstream
Tssr9282 transcription start site region 9282 285 bp downstream
Tssr9283 transcription start site region 9283 270 bp downstream
Tssr9284 transcription start site region 9284 258 bp downstream
Tssr9285 transcription start site region 9285 244 bp downstream
Tssr9286 transcription start site region 9286 165 bp downstream
Tssr9287 transcription start site region 9287 342 bp upstream
Tssr9288 transcription start site region 9288 458 bp upstream
Tssr9289 transcription start site region 9289 475 bp upstream
Tssr9290 transcription start site region 9290 631 bp upstream
Tssr9291 transcription start site region 9291 677 bp upstream
Tssr9292 transcription start site region 9292 796 bp upstream
Tssr9293 transcription start site region 9293 825 bp upstream
Tssr9294 transcription start site region 9294 845 bp upstream
Tssr9295 transcription start site region 9295 861 bp upstream
Tssr9296 transcription start site region 9296 883 bp upstream
Tssr9297 transcription start site region 9297 892 bp upstream
Tssr9298 transcription start site region 9298 918 bp upstream
Tssr9299 transcription start site region 9299 940 bp upstream
Tssr9300 transcription start site region 9300 957 bp upstream
Tssr9301 transcription start site region 9301 1091 bp upstream
Tssr9302 transcription start site region 9302 1121 bp upstream
Tssr9303 transcription start site region 9303 1183 bp upstream
Tssr9304 transcription start site region 9304 1207 bp upstream
Tssr9305 transcription start site region 9305 1225 bp upstream
Tssr9306 transcription start site region 9306 1237 bp upstream
Tssr9307 transcription start site region 9307 1241 bp upstream
Tssr9308 transcription start site region 9308 1274 bp upstream
Tssr9309 transcription start site region 9309 1288 bp upstream
Tssr9310 transcription start site region 9310 1319 bp upstream
Tssr9311 transcription start site region 9311 1331 bp upstream
Tssr9312 transcription start site region 9312 1356 bp upstream
Tssr9313 transcription start site region 9313 1376 bp upstream
Tssr9314 transcription start site region 9314 1387 bp upstream
Tssr9315 transcription start site region 9315 1481 bp upstream
Tssr9316 transcription start site region 9316 1664 bp upstream
Tssr9317 transcription start site region 9317 1941 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory