About   Help   FAQ
rs240635821 SNP Detail
Summary
  • ID
    rs240635821
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr12:27388591 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTGTATTA GACATTCAAT
AGAGTTCACT GGGAATGGTC TTCACAATGC ATTCGTCGAA ACCGCTTTAA ATATTGTTAA
AAGCGCATTC AAGCGCCTTT CCTGAGTTCT AACTGGGATT TAAAAAAAAA AAAAAAAAAA
AAAAAAGAAA GAAAGAAAAG ATTTCTTTTT TTCCTGATCT CCAACCAAGA ACTGTCTCTT
M
TTTTCCTACC AAGAAACTCG GCCACATAAT TTTAAAATAC AAATTGCAGC TATGCTTCCA
TTCTGAAGCC AGATCCTCAC TCCTTTTCTA ATTTATTTAA AAGTTCCTTC CTCACCATGG
AAAACGCCCG ACGGGAAACG GGAACACATG CAAATGTTAA GAACTCAAGA CACTCAGAAT
GCCTTTTCCT TAGGCTTCAG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385383304 MGP_WTSI_12_28023457 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240635821 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385383304 MGP_WTSI_12_28023457 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:27388591 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi4506 CpG island 4506 155 bp proximal
Rr464225 regulatory region 464225 1297 bp distal
Rr464226 regulatory region 464226 within coordinates
Sox11 SRY (sex determining region Y)-box 11 within coordinates
Tssr113044 transcription start site region 113044 771 bp upstream
Tssr115967 transcription start site region 115967 1755 bp upstream
Tssr115968 transcription start site region 115968 1741 bp upstream
Tssr115969 transcription start site region 115969 1660 bp upstream
Tssr115970 transcription start site region 115970 1625 bp upstream
Tssr115971 transcription start site region 115971 1569 bp upstream
Tssr115972 transcription start site region 115972 1456 bp upstream
Tssr115973 transcription start site region 115973 1094 bp upstream
Tssr115974 transcription start site region 115974 1037 bp upstream
Tssr115975 transcription start site region 115975 1006 bp upstream
Tssr115976 transcription start site region 115976 986 bp upstream
Tssr115977 transcription start site region 115977 968 bp upstream
Tssr115978 transcription start site region 115978 342 bp upstream
Tssr115979 transcription start site region 115979 252 bp upstream
Tssr115980 transcription start site region 115980 74 bp upstream
Tssr115981 transcription start site region 115981 591 bp downstream
Tssr115982 transcription start site region 115982 814 bp downstream
Tssr115983 transcription start site region 115983 1592 bp downstream
Tssr115984 transcription start site region 115984 1607 bp downstream
Tssr115985 transcription start site region 115985 1665 bp downstream
Tssr115986 transcription start site region 115986 1681 bp downstream
Tssr115987 transcription start site region 115987 1702 bp downstream
Tssr115988 transcription start site region 115988 1729 bp downstream
Tssr115989 transcription start site region 115989 1777 bp downstream
Tssr115990 transcription start site region 115990 1848 bp downstream
Tssr115991 transcription start site region 115991 1935 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory