rs240636971 SNP Detail

Summary

• ID
  rs240636971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136325784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCTGTC TTCCTGCTGG
  GGGTGGGCTC TACAAGTTCC CTCTCCCCAA TGTAGCGCAT TTCATCTAAG GCCCCTCCCT
  TTGAGTCTTT AGAGTCTCTC ACCTCCCAGG TCTCTAGTAC ATTCTGGAGG GTCCCCCCAA
  ACTCCTACCT CCCGAGATTG CTTGTTTCTA TCCTTTCTGC TGGCCCTCAG TCCTTCCCCC
  R
  CCCCCCCCCC AATACCAGAT CATGATCTCC TCTACCCCTA TCCCCTTTCC CTCCAAAGTC
  CCTCCCTCCC TCCCTTCTCC CTTTGATTGC TTTCCTCTTC CTCCCAAGTG GGATTGAGGA
  ATCCTCACTT GGGCCCTTCA GCTTGTTGAC CTTTATGAGT TCTGTGGACT GTATCTTGGG
  TATTATGTGC GTTTCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CBA/J	CE/J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355804328	MGP_WTSI_2_136309600	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CBA/J	CE/J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240636971					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355804328	MGP_WTSI_2_136309600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136325784 () rs orientation: forward

Symbol	Name	Function Class
Gm32546	predicted gene, 32546	within coordinates
Rr565839	regulatory region 565839	1750 bp proximal