rs240637406 SNP Detail

Summary

• ID
  rs240637406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123620699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTAGCA GGAAGTAGGC
  AAACAGGGAG GGAGTGACAA ATGGAAGTTA TGTCCTGTTC TTCCACTAGG TAGCCTCTTA
  AGTTACCAAA GACTTTTCTT TCATAGAAAG GTTGCAGGGA TTGACAGTAG GTCTTACCCC
  AGCCCCACTC ATTAGTAAAC AGCTGTCTGC AGCTGAGGCA GAAACTCTAG TTTATAATCA
  M
  AGATGGGCTC TAGGCTGACA CGTGAGCTTT GGTGCCACTG TAGGGAACTT AGCCTGTATT
  TGGACTCCTG CTGTCCATAT GCAGAGCTGA AGCCTTCATG TAGTAGTTGC TTTTTCCTAG
  ACCTCTGTTT GGTTCCTGAG TGTGTGTGTG TGTGTGTGTG TGTGAGTGTG TGTGTGTGTG
  AGTGTGTGTG TGTGTGTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234327	CHEV_9_123700752	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240637406					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123620699 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	420 bp downstream
Tssr92158	transcription start site region 92158	435 bp downstream
Tssr92159	transcription start site region 92159	443 bp downstream
Tssr92160	transcription start site region 92160	836 bp downstream
Tssr92161	transcription start site region 92161	853 bp downstream