rs240640078 SNP Detail

Summary

• ID
  rs240640078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88862889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTTGCAG TTTAATGTCT
  TAATGCTTAC CTCTGCTGTC GTCCGGCGGT TGGGAAAGCT GGCCTCTGGG TGATGGACTT
  CCAGCAAGAA GTATTCATAA GTGGAACAAA AGCTCTCAGC CAAACTGCAC TTCAGCCAGG
  GGCAGGCACA CAGCTTCCTG AATTTTAATG AGGAGATTAA GGGAGTGGAT CCTAGAAGTG
  Y
  TCTCCTTGAT TGCATAACCA GTGGCTTGGA GCTTTCCCAA TAGGAAAGGA AGAGCCCTTG
  GTCCCCCTCA CTGCTCACTA GCCAGGTGGA TGTCTTGGAA AGAGAAGTAT TACTAAGGAT
  AGGAGAGTCC AGCGCTGGAT TTGGATCCTG ACCAGTATTG GGCCCCGAAC AGAAAACTAC
  TCAAAGGTCT ACATCTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394895837	MGP_WTSI_15_88809116	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240640078					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394895837	MGP_WTSI_15_88809116	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88862889 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	1335 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	within coordinates
Rr507763	regulatory region 507763	within coordinates
Rr507764	regulatory region 507764	311 bp proximal
Tssr135826	transcription start site region 135826	827 bp upstream
Tssr135827	transcription start site region 135827	737 bp upstream
Tssr135828	transcription start site region 135828	122 bp upstream
Tssr135829	transcription start site region 135829	89 bp upstream
Tssr135830	transcription start site region 135830	87 bp downstream
Tssr135831	transcription start site region 135831	272 bp downstream
Tssr135832	transcription start site region 135832	1738 bp downstream