rs240643937 SNP Detail

Summary

• ID
  rs240643937
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37848377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCTCAAC CTGTTGGACA
  CTTGCGCCGT GTGCCACCAG AACATCCAGA GCCGGGTGCC CAAGCTGCTG CCCTGCCTGC
  ACTCGTTCTG CCAGCGCTGT TTGCCCGCGC CGCAGCGCTA TCTCATGCTG ACGGCGCCCG
  CGCTGGGCTC GGCAGAGACC CCTCCACCCG CTCCCGCCCC CGCCCCCGCC CCGGGCTCCC
  M
  GGCCGGTGGT CCTTCGCCAT TCGCCACCCA AGGTGAGAGG GGCCCGCGAG GTGGCGGGCG
  CGACCCGCTG TCACGCGGCT GGGGAGGGGG TGAAATGGGC CCGCGCCGGC TGAGCGACTC
  GGCGGTCCCT CACTTTTGCA GAGCTCTGAC GGTTGTGGCG AGTTAGCTGC TCTCTGCTCC
  TCCGCAAAGC TTTGTCCGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367996723	MGP_WTSI_6_37821442	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240643937					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367996723	MGP_WTSI_6_37821442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37848377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17305	CpG island 17305	within coordinates
Rr368051	regulatory region 368051	68 bp upstream
Rr399615	regulatory region 399615	587 bp downstream
Rr628726	regulatory region 628726	621 bp distal
Rr628727	regulatory region 628727	681 bp distal
Rr628728	regulatory region 628728	40 bp proximal
Trim24	tripartite motif-containing 24	within coordinates
Tssr55624	transcription start site region 55624	722 bp downstream
Tssr55625	transcription start site region 55625	560 bp downstream
Tssr55626	transcription start site region 55626	515 bp downstream
Tssr55627	transcription start site region 55627	486 bp downstream
Tssr55628	transcription start site region 55628	469 bp downstream
Tssr55629	transcription start site region 55629	427 bp downstream
Tssr60360	transcription start site region 60360	975 bp upstream
Tssr60361	transcription start site region 60361	98 bp upstream
Tssr60362	transcription start site region 60362	35 bp downstream