rs240647831 SNP Detail

Summary

• ID
  rs240647831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131648911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCGAGCT CGGGAGGTAC
  TTACCCCGGC CGCGATCGCA AGGGGGGCCC GCGCGGGTGG GCGGGCGGGC GGGCGAGCAG
  AGCGCGCGCA GGCTGCAGGA GCCCCGCAGC CCCGGCTGCA CCCGAGCCCC GCAGCCCCCT
  CCCTGCGCAC CGCCCGCGGG CCCGGCCAAC GCTGGCTCCC AGCTCCGCTG CGGAAAACCC
  R
  AGCGGGGGCG GCTCCCTGCC TTGCGGCCCC GGGAAAATCC GGGGGTGGCC GCCAGGGATC
  TCCAAGCGGC CGGCCGAGGC GGCCCCGCGC ATCCCTCCCC CGGAGCCCGG CCCGTCGGGT
  CAGTGTCTGC CTCTCTGCTC TTCCCCGCAG AGCGCCCGGA CGACCGCGCG ATGACGGCCG
  GGAGCCCCGG AGACGGCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363283907	MGP_WTSI_4_131477515	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240647831					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363283907	MGP_WTSI_4_131477515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131648911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	within coordinates
Epb41	erythrocyte membrane protein band 4.1	1813 bp downstream
Gm12992	predicted gene 12992	1571 bp upstream
Gm50475	predicted gene, 50475	72 bp upstream
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	within coordinates
Tssr1320	transcription start site region 1320	90 bp upstream
Tssr39357	transcription start site region 39357	1000 bp downstream
Tssr39358	transcription start site region 39358	440 bp downstream
Tssr39359	transcription start site region 39359	393 bp downstream
Tssr39360	transcription start site region 39360	1827 bp upstream
Tssr43616	transcription start site region 43616	893 bp upstream
Tssr43617	transcription start site region 43617	578 bp upstream