rs240663227 SNP Detail

Summary

• ID
  rs240663227
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGTGGT GACTTCACCT
  GTGGTGGTGA CATCATCAGT GTTTGTGATC TCAGCAGTGG TGGTGACATC AGAAGTAGTT
  GTGATTTCGG CAGTGGTTGT GACATCAGCG GTGGTTGTGA CATCAGCAGT GGTGGTGACT
  TCAGCCTTTG TGGTGGATGG GGAACTGGAT CTTTGCTGGT ACTCCTGCCG TGGCCATGCC
  T
  CACTGTTTTC CCCGTCTGTA AGTTACAGAT GTTAGAATTA CTTGGAAGGA GAAACTTCAA
  TACAAAATGA TTCCTTTCTC AGATGTATGC GGCAAGTGTG TCAGGCCCTG TCTACCCCCT
  TCAGCCTTTC TTTTTCCTGT TCTTTTAATT TGTTACTATT AGCGGTTGCA CTGGAGCTCA
  CAAAACTCCA CCTGCTTTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss366873500	MGP_WTSI_5_137633914	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs240663227					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873500	MGP_WTSI_5_137633914	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190128 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	488 bp upstream
Tssr49319	transcription start site region 49319	324 bp downstream
Tssr49320	transcription start site region 49320	312 bp downstream
Tssr53954	transcription start site region 53954	394 bp upstream
Tssr53955	transcription start site region 53955	378 bp upstream
Tssr53956	transcription start site region 53956	359 bp upstream
Tssr53957	transcription start site region 53957	342 bp upstream
Tssr53958	transcription start site region 53958	287 bp upstream
Tssr53959	transcription start site region 53959	274 bp upstream
Tssr53960	transcription start site region 53960	208 bp upstream
Tssr53961	transcription start site region 53961	109 bp upstream
Tssr53962	transcription start site region 53962	91 bp upstream
Tssr53963	transcription start site region 53963	52 bp upstream
Tssr53964	transcription start site region 53964	12 bp upstream
Tssr53965	transcription start site region 53965	4 bp downstream
Tssr53966	transcription start site region 53966	872 bp downstream
Tssr53967	transcription start site region 53967	898 bp downstream