rs240672726 SNP Detail

Summary

• ID
  rs240672726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124734335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGGAGG GGTTTAGGAG
  CTATTTTGGA GAGCCTACGA TGGAAGTTTG TGGACCTGGG CGGGAAAGGA TGAAGACGTA
  CTAGGAGAAT GGTGTTTCTG GAAGAGATAA GCGTTTAAGG CAGTGATTGG TGTTGAGAAG
  AATGCAAACC ACAAGAATTT GGGAATGATG AAGGAAAGCT GGAGGCAAGT CCGGAGATCC
  Y
  TCTGTGGGAG AGAAGGCATG AGAAGTCTCA GAAGAGGGGT GGAGGGCAGA GGATGCCTAT
  TCTAGAGGGA GACTGGGGTG GGCTGGGTTG GTAAACATGA ATGTGGGGAC TTCCAATCGA
  ACTAAGAACT ATTTCCTTTG GCAAATAAAG TGGAGGAGAA TGAATTAGAG AGGTCTGGAA
  GGAAACACAA GATAAATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369942289	MGP_WTSI_6_124707390	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240672726					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369942289	MGP_WTSI_6_124707390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124734335 () rs orientation: forward

Symbol	Name	Function Class
Atn1	atrophin 1	885 bp upstream
Cpgi17967	CpG island 17967	within coordinates
Gm45234	predicted gene 45234	1351 bp upstream
Rr132955	regulatory region 132955	1866 bp proximal
Rr145725	regulatory region 145725	within coordinates
Tssr63141	transcription start site region 63141	1009 bp upstream
Tssr63142	transcription start site region 63142	845 bp upstream
Tssr63143	transcription start site region 63143	604 bp upstream
Tssr63144	transcription start site region 63144	525 bp upstream
Tssr63145	transcription start site region 63145	489 bp upstream
Tssr63146	transcription start site region 63146	474 bp upstream
Tssr63147	transcription start site region 63147	397 bp upstream
Tssr63148	transcription start site region 63148	364 bp upstream
Tssr63149	transcription start site region 63149	341 bp upstream
Tssr63150	transcription start site region 63150	106 bp upstream