rs240676018 SNP Detail

Summary

• ID
  rs240676018
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175459082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGCACG TCTAACATAC
  TCTCCTACAG GGGCACTATC GGGTGGTGTT TCCTTCCAGT CCCTACCCAA AGAAATGCCA
  TTTGTGTTCT CATCAGAAAT TGGAAAAACC AATAAATCTT CATTGATGCT CTTATTTTAT
  TTTAATCACA ATACGATCTA GAAAAGAAGC ACAACTCACG AATAGGCCCC CAAACCAAGC
  T
  CTATACGTTT CAAATGAAGT AGAGATGTCA AAGTGATGAG ACACCCTCAA ACCACACATT
  TGAGTAGAGA TGCAGGGTGT TCACCATCTT GCCCATGGCA AAGCATGAGC TAGATTCTAA
  AGTCCTAGGC AAGAAAAAAA CAAACAAAGC AAAACTCTGG TCAGTCTAGT TACACCTCTA
  GAAATCCTAC TCAGGAGATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151884	CHEV_1_177561647	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240676018					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175459082 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	677 bp upstream
Rr396618	regulatory region 396618	302 bp upstream
Tssr10313	transcription start site region 10313	452 bp upstream
Tssr10314	transcription start site region 10314	480 bp upstream
Tssr10315	transcription start site region 10315	499 bp upstream
Tssr10316	transcription start site region 10316	528 bp upstream
Tssr10317	transcription start site region 10317	548 bp upstream
Tssr10318	transcription start site region 10318	580 bp upstream
Tssr10319	transcription start site region 10319	588 bp upstream
Tssr10320	transcription start site region 10320	604 bp upstream
Tssr10321	transcription start site region 10321	625 bp upstream
Tssr10322	transcription start site region 10322	639 bp upstream
Tssr10323	transcription start site region 10323	653 bp upstream